rs8243366 SNP Detail

Summary

• ID
  rs8243366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62313293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GAAATCTAGG GCTGCTGTGC
  R
  ACCCGCCAAC CAGGCGCTGT CTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12738231	X15643_JC690_1	ROCHEBIO	RPAMM	f	SNP	G	G	G		G		A
ss50422436	NES13457482	PERLEGEN	MM_PANEL2	f	SNP		G	A	G		G	A	A	G	A	A	A	A	A
ss147265806	ENSMUSSNP5471087	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8243366					SNP	G	G	?	G	G	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50422436	NES13457482	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62313293 () rs orientation: forward

Symbol	Name	Function Class
Adrb2	adrenergic receptor, beta 2	263 bp upstream
Cpgi10125	CpG island 10125	within coordinates
Gm9949	predicted gene 9949	within coordinates
Rr393783	regulatory region 393783	within coordinates
Rr539064	regulatory region 539064	1310 bp distal
Rr539065	regulatory region 539065	1199 bp distal
Rr539066	regulatory region 539066	17 bp distal
Rr539067	regulatory region 539067	within coordinates
Tssr151487	transcription start site region 151487	40 bp downstream
Tssr153623	transcription start site region 153623	236 bp upstream