rs8243514 SNP Detail

Summary

• ID
  rs8243514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128517813 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GACTG GTGGAAGATG GAGAACACCA
  Y
  TGGTTGCAGG ATTCTGTGTT CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ
ss12738392	X99581_JC834_1	ROCHEBIO	RPAMM	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ
rs8243514					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128517813 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi697	CpG island 697	708 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	1007 bp upstream
Tssr8536	transcription start site region 8536	878 bp upstream
Tssr8537	transcription start site region 8537	1201 bp upstream
Tssr8538	transcription start site region 8538	1229 bp upstream
Tssr8539	transcription start site region 8539	1243 bp upstream
Tssr13461	transcription start site region 13461	1614 bp upstream
Tssr13462	transcription start site region 13462	1444 bp upstream
Tssr13463	transcription start site region 13463	1344 bp upstream
Tssr13464	transcription start site region 13464	1302 bp upstream
Tssr13465	transcription start site region 13465	1289 bp upstream
Tssr13466	transcription start site region 13466	1218 bp upstream
Tssr13467	transcription start site region 13467	1176 bp upstream
Tssr13468	transcription start site region 13468	1090 bp upstream
Tssr13469	transcription start site region 13469	1036 bp upstream
Tssr13470	transcription start site region 13470	946 bp upstream
Tssr13471	transcription start site region 13471	874 bp upstream
Tssr13472	transcription start site region 13472	806 bp upstream
Tssr13473	transcription start site region 13473	791 bp upstream
Tssr13474	transcription start site region 13474	730 bp upstream
Tssr13475	transcription start site region 13475	709 bp upstream
Tssr13476	transcription start site region 13476	697 bp upstream
Tssr13477	transcription start site region 13477	631 bp upstream
Tssr13478	transcription start site region 13478	740 bp downstream
Tssr13479	transcription start site region 13479	769 bp downstream
Tssr13480	transcription start site region 13480	1091 bp downstream