rs8243674 SNP Detail

Summary

• ID
  rs8243674
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79890710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCCACTC TTTCTCTCTC
  CCAGGGGTTT CGTGTGCATC GTCACCAACG TGGCCTCGCA ATGAGGCAAA ACTGACGTAA
  ACTACACTCA GCTAGTCGAT CTGCATGCCC GATATGCTGA GTGTGGTTTA CGAATCCTGG
  CCTTCCCCTG CAACCAGTTT GGGAGGCAGG TGTGTGGCTG TTCCCCAGGC AATGCCCCTC
  M
  TACGGGGTGG GGGTGGGGGG CTGTGTCAGT GTGTGTGTGT GTCTCAGTGT ACAGTGTAGT
  GTATCTTCCA AGTAAATGTT GCTTCCTGCA GGAGCCAGGA AGTAATCAAG AAATCAAGGA
  GTTTGCAGCC GGCTACAACG TCAAGTTTGA CATGTACAGC AAGATCTGTG TAAATGGGGA
  CGATGCCCAC CCACTGTGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12738571	AF044056_MC1039_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8243674					SNP	A	A	A	A	A	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79890710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1840	CpG island 1840	5 bp distal
Gm65896	predicted gene, 65896	896 bp upstream
Gpx4	glutathione peroxidase 4	within coordinates
Rr384983	regulatory region 384983	1890 bp downstream
Rr402035	regulatory region 402035	1272 bp downstream
Rr435057	regulatory region 435057	1378 bp distal
Rr435058	regulatory region 435058	401 bp distal
Rr435059	regulatory region 435059	670 bp distal
Rr435060	regulatory region 435060	439 bp distal
Rr435061	regulatory region 435061	1035 bp proximal
Tssr94472	transcription start site region 94472	1686 bp downstream
Tssr94473	transcription start site region 94473	1306 bp downstream
Tssr94474	transcription start site region 94474	1211 bp downstream
Tssr94475	transcription start site region 94475	892 bp downstream
Tssr94476	transcription start site region 94476	850 bp downstream
Tssr94477	transcription start site region 94477	833 bp downstream
Tssr94478	transcription start site region 94478	823 bp downstream
Tssr98381	transcription start site region 98381	1462 bp upstream