rs8243740 SNP Detail

Summary

• ID
  rs8243740
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79889400 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GACCA ATGGACGCGC GAGGCCGAGT
  M
  TGGCTTGCCC GCCCTCGGGC ACGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12738640	AJ012104_MC1076_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8243740					SNP	A	A	A	A	A	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79889400 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1840	CpG island 1840	within coordinates
Gm65896	predicted gene, 65896	within coordinates
Gpx4	glutathione peroxidase 4	within coordinates
Rr384983	regulatory region 384983	580 bp downstream
Rr402035	regulatory region 402035	within coordinates
Rr435055	regulatory region 435055	1569 bp distal
Rr435056	regulatory region 435056	1129 bp distal
Rr435057	regulatory region 435057	68 bp distal
Rr435058	regulatory region 435058	404 bp proximal
Rr435059	regulatory region 435059	619 bp proximal
Rr435060	regulatory region 435060	850 bp proximal
Tssr94472	transcription start site region 94472	376 bp downstream
Tssr94473	transcription start site region 94473	within coordinates
Tssr94474	transcription start site region 94474	57 bp upstream
Tssr94475	transcription start site region 94475	400 bp upstream
Tssr94476	transcription start site region 94476	431 bp upstream
Tssr94477	transcription start site region 94477	463 bp upstream
Tssr94478	transcription start site region 94478	480 bp upstream
Tssr98381	transcription start site region 98381	152 bp upstream