rs8243776 SNP Detail

Summary

• ID
  rs8243776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80639085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCCCAGG TGCTGATAAG
  TACCATCCCT ACTGGCAATC TCCAGAAGCA GGAGGGGGAG GCTGGCTGTT GCAGTCACTG
  CCCCTGGAGC CCCTCTGCAG AGGCCCCTGG GTGACGTGGC CTAGCCAGAA GACCAATCAC
  ATGGCCAGCA GGAGCCCAGG GACCCAAGTT GCCAAGAGTC CCCTTTGGCA GGCAGGGTCC
  R
  TCCTGGGGAG GCTGTGACAC AGCACCTCCC TCCTCATACT CTTCTTGGAC TTCAACAGCT
  GCCCCTGCAT AGAGTGCTGG GTTGGGTTGC CCTCCCTCAC TTTAGGTCCT AGCCAGTGGC
  CTTAGGCAGA GAAGCCAGGC CTTGTGTTGA GGAACCCTGT TCTGTTGTGC ACACACAGCA
  CATAACAGCC CCATCCCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12738682	U09208_MC1091_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8243776					SNP	G	G	G	G	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80639085 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	1992 bp upstream
Rr366747	regulatory region 366747	1700 bp upstream
Rr435397	regulatory region 435397	1396 bp proximal
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94612	transcription start site region 94612	848 bp downstream
Tssr94613	transcription start site region 94613	429 bp downstream
Tssr94614	transcription start site region 94614	30 bp upstream
Tssr94615	transcription start site region 94615	350 bp upstream
Tssr94616	transcription start site region 94616	394 bp upstream
Tssr94617	transcription start site region 94617	412 bp upstream
Tssr94618	transcription start site region 94618	786 bp upstream
Tssr94619	transcription start site region 94619	817 bp upstream
Tssr94620	transcription start site region 94620	849 bp upstream
Tssr94621	transcription start site region 94621	873 bp upstream
Tssr94622	transcription start site region 94622	960 bp upstream
Tssr94623	transcription start site region 94623	1469 bp upstream
Tssr94624	transcription start site region 94624	1982 bp upstream
Tssr98515	transcription start site region 98515	776 bp downstream