rs8243777 SNP Detail

Summary

• ID
  rs8243777
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80639258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGTCCCC TTTGGCAGGC
  AGGGTCCGTC CTGGGGAGGC TGTGACACAG CACCTCCCTC CTCATACTCT TCTTGGACTT
  CAACAGCTGC CCCTGCATAG AGTGCTGGGT TGGGTTGCCC TCCCTCACTT TAGGTCCTAG
  CCAGTGGCCT TAGGCAGAGA AGCCAGGCCT TGTGTTGAGG AACCCTGTTC TGTTGTGCAC
  M
  CACAGCACAT AACAGCCCCA TCCCTTCTGT TGCAGTGACC AAGCAGAGGG ACACAGAGAT
  GGGCCAGCAG AGCCTGCTGT TCCAGGTGAG GTGGGACCAG TCAGGGGTGG ACCAGACACA
  CGGGTGGTGA TGCCAATAGT GCTGTGCATG TTTTACAGAT TGACTACCCT GAGATCGCAG
  AGGGTATCAT GCCACGCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12738683	U09208_MC1091_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8243777					SNP	A	A	A	A	A	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80639258 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	1819 bp upstream
Rr366747	regulatory region 366747	1527 bp upstream
Rr435397	regulatory region 435397	1223 bp proximal
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94612	transcription start site region 94612	1021 bp downstream
Tssr94613	transcription start site region 94613	602 bp downstream
Tssr94614	transcription start site region 94614	132 bp downstream
Tssr94615	transcription start site region 94615	177 bp upstream
Tssr94616	transcription start site region 94616	221 bp upstream
Tssr94617	transcription start site region 94617	239 bp upstream
Tssr94618	transcription start site region 94618	613 bp upstream
Tssr94619	transcription start site region 94619	644 bp upstream
Tssr94620	transcription start site region 94620	676 bp upstream
Tssr94621	transcription start site region 94621	700 bp upstream
Tssr94622	transcription start site region 94622	787 bp upstream
Tssr94623	transcription start site region 94623	1296 bp upstream
Tssr94624	transcription start site region 94624	1809 bp upstream
Tssr98515	transcription start site region 98515	603 bp downstream