rs8243778 SNP Detail

Summary

• ID
  rs8243778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80639562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGGACC AGACACACGG
  GTGGTGATGC CAATAGTGCT GTGCATGTTT TACAGATTGA CTACCCTGAG ATCGCAGAGG
  GTATCATGCC ACGCCACCGT TTCATGTCTG CTTATGAGCA GAGGATCGAG CCTCCAGACC
  GCCGCTGGCA GTACCTGCTC ATGGCTGCTG AGCCCTATGA GACCATTGCT TTCAAGGTAG
  Y
  GACCCTACAG GACAGAGAGA GCAGCTAAAT TCAGCTGTCT GTGTATCCTA GCCCCTCCTT
  GGGGTGCTGC AGCCTCTGAC TTTCTCCCTA GGTGCCAAGC CGGGAGATTG ACAAGGCTGA
  GGGCAAGTTT TGGACCCACT GGAACAGAGA AACCAAGCAG GTGAGGTTCC ACAGGCCTTG
  CGTGGGTACT CTCTCAGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12738684	U09208_MC1092_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8243778					SNP	C	C	C	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80639562 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	1515 bp upstream
Rr366747	regulatory region 366747	1223 bp upstream
Rr435397	regulatory region 435397	919 bp proximal
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94612	transcription start site region 94612	1325 bp downstream
Tssr94613	transcription start site region 94613	906 bp downstream
Tssr94614	transcription start site region 94614	436 bp downstream
Tssr94615	transcription start site region 94615	111 bp downstream
Tssr94616	transcription start site region 94616	68 bp downstream
Tssr94617	transcription start site region 94617	46 bp downstream
Tssr94618	transcription start site region 94618	309 bp upstream
Tssr94619	transcription start site region 94619	340 bp upstream
Tssr94620	transcription start site region 94620	372 bp upstream
Tssr94621	transcription start site region 94621	396 bp upstream
Tssr94622	transcription start site region 94622	483 bp upstream
Tssr94623	transcription start site region 94623	992 bp upstream
Tssr94624	transcription start site region 94624	1505 bp upstream
Tssr98515	transcription start site region 98515	299 bp downstream