rs8243812 SNP Detail

Summary

• ID
  rs8243812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939215 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCCCT CCAGGAGGCT GGATGTCAAG
  Y
  CCAGCATCAT CTCTCCTTCC ACTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12738719	X13414_JC651_17	ROCHEBIO	RPAMM	f	SNP	C		T	C	C	T	C	C	C	C		C	C	C		T
ss147250047	ENSMUSSNP3056410	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	A							G
ss325640662	CHEV_18_60965797	CHEVERUD	SCREENING_POP	r	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8243812					SNP	C	C	T	C	C	T	C	C	C	C	C	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939215 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1902 bp distal
Rr405670	regulatory region 405670	984 bp downstream
Rr405671	regulatory region 405671	186 bp downstream
Rr405672	regulatory region 405672	369 bp upstream
Tssr5344	transcription start site region 5344	1528 bp upstream
Tssr151328	transcription start site region 151328	1126 bp downstream
Tssr151329	transcription start site region 151329	1055 bp downstream
Tssr151330	transcription start site region 151330	175 bp downstream
Tssr151331	transcription start site region 151331	156 bp downstream
Tssr151332	transcription start site region 151332	854 bp upstream
Tssr151333	transcription start site region 151333	1392 bp upstream
Tssr151334	transcription start site region 151334	1756 bp upstream
Tssr151335	transcription start site region 151335	1765 bp upstream
Tssr151336	transcription start site region 151336	1799 bp upstream
Tssr151337	transcription start site region 151337	1853 bp upstream
Tssr151338	transcription start site region 151338	1909 bp upstream
Tssr153493	transcription start site region 153493	1912 bp downstream
Tssr153494	transcription start site region 153494	1934 bp downstream