rs8243857 SNP Detail

Summary

• ID
  rs8243857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80632749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCCTAAA GCCCCACCTG
  GCCCGCTGCA GAGCTTCCAT CCAGTCCTGA CACTGCTCTT GGCTACAGCA TTCAAAGTGA
  TATTTCCTGC TGAGGTCTTC GACGAAGCCT GGAAAGGGAT AAAGGATAAG AGCCACCTCT
  GGTCAGTGTC CAGTTGGTCT ACATCCTGTT GGCCACAAGT CCCAGCTTCC TCTCACCAGG
  R
  TTTCAAACTA CACCTCTTAT TCTAACACCA AGTCATCTTC TGCCTGTCTC ATGCTGGCTT
  TGTCCTCCAG AATCCTGACC CCTGAACCCA CAAATAGGGG ACTCACTGGG AAGTTGGGTT
  ATTGGGAATG GAAGTGGCTA ATAGAAGGTC ATTAGGTTAG ACCCTAAACT GAATGGCAAT
  AGAACATGGG TGATGAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ
ss12738771	X83733_MC1119_1	ROCHEBIO	RPAMM	f	SNP	A		A	A	A		A		A	A	G					A
ss61290505	NES16901678	PERLEGEN	MM_PANEL2	f	SNP		A	A	A		A		A	A			A	A	A	G		A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ
rs8243857					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290505	NES16901678	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80632749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	567 bp proximal
Dot1l	DOT1 like histone lysine methyltransferase	1454 bp downstream
Plekhj1	pleckstrin homology domain containing, family J member 1	within coordinates
Rr435393	regulatory region 435393	793 bp proximal
Rr435394	regulatory region 435394	1294 bp proximal
Rr435395	regulatory region 435395	1701 bp proximal
Rr435396	regulatory region 435396	1828 bp proximal
Sf3a2	splicing factor 3a, subunit 2	1820 bp upstream
Tssr94606	transcription start site region 94606	1038 bp upstream
Tssr94607	transcription start site region 94607	1116 bp upstream
Tssr94608	transcription start site region 94608	1698 bp upstream
Tssr94609	transcription start site region 94609	1715 bp upstream
Tssr94610	transcription start site region 94610	1737 bp upstream
Tssr94611	transcription start site region 94611	1987 bp upstream
Tssr98506	transcription start site region 98506	542 bp upstream
Tssr98507	transcription start site region 98507	946 bp downstream
Tssr98508	transcription start site region 98508	1004 bp downstream
Tssr98509	transcription start site region 98509	1054 bp downstream
Tssr98510	transcription start site region 98510	1077 bp downstream
Tssr98511	transcription start site region 98511	1276 bp downstream
Tssr98512	transcription start site region 98512	1305 bp downstream
Tssr98513	transcription start site region 98513	1561 bp downstream
Tssr98514	transcription start site region 98514	1940 bp downstream