rs8243858 SNP Detail

Summary

• ID
  rs8243858
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80633262 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGAGA TTTGGGCATC ATGTCTACCT
  M
  TATTATCCAG TGGGGTTCTT TATCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	MRL/MpJ	PWD/PhJ
ss12738772	X83733_MC1120_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	C	A		A
ss61290504	NES16901607	PERLEGEN	MM_PANEL2	r	SNP			T							G		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	MRL/MpJ	PWD/PhJ
rs8243858					SNP	A	A	A	A	A	A	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290504	NES16901607	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80633262 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	54 bp proximal
Dot1l	DOT1 like histone lysine methyltransferase	1967 bp downstream
Plekhj1	pleckstrin homology domain containing, family J member 1	within coordinates
Rr435393	regulatory region 435393	280 bp proximal
Rr435394	regulatory region 435394	781 bp proximal
Rr435395	regulatory region 435395	1188 bp proximal
Rr435396	regulatory region 435396	1315 bp proximal
Sf3a2	splicing factor 3a, subunit 2	1307 bp upstream
Tssr94606	transcription start site region 94606	525 bp upstream
Tssr94607	transcription start site region 94607	603 bp upstream
Tssr94608	transcription start site region 94608	1185 bp upstream
Tssr94609	transcription start site region 94609	1202 bp upstream
Tssr94610	transcription start site region 94610	1224 bp upstream
Tssr94611	transcription start site region 94611	1474 bp upstream
Tssr98506	transcription start site region 98506	1055 bp upstream
Tssr98507	transcription start site region 98507	433 bp downstream
Tssr98508	transcription start site region 98508	491 bp downstream
Tssr98509	transcription start site region 98509	541 bp downstream
Tssr98510	transcription start site region 98510	564 bp downstream
Tssr98511	transcription start site region 98511	763 bp downstream
Tssr98512	transcription start site region 98512	792 bp downstream
Tssr98513	transcription start site region 98513	1048 bp downstream
Tssr98514	transcription start site region 98514	1427 bp downstream