rs8243860 SNP Detail

Summary

• ID
  rs8243860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80634172 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             CCCGGTTACT GCGCCTGCGC GTTGTTGGGC TGGTTGCGCG GCCCTAATTT
  Y
  TGGGTCTGCG CGGTTGAACA GAGTCAGACG GGAAGGAGAT GGCCCGTCCT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12738774	X83733_MC1121_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8243860					SNP	T	T	T	T	T	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80634172 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	within coordinates
Plekhj1	pleckstrin homology domain containing, family J member 1	within coordinates
Rr435393	regulatory region 435393	130 bp distal
Rr435394	regulatory region 435394	within coordinates
Rr435395	regulatory region 435395	278 bp proximal
Rr435396	regulatory region 435396	405 bp proximal
Sf3a2	splicing factor 3a, subunit 2	397 bp upstream
Tssr94606	transcription start site region 94606	371 bp downstream
Tssr94607	transcription start site region 94607	228 bp downstream
Tssr94608	transcription start site region 94608	275 bp upstream
Tssr94609	transcription start site region 94609	292 bp upstream
Tssr94610	transcription start site region 94610	314 bp upstream
Tssr94611	transcription start site region 94611	564 bp upstream
Tssr98506	transcription start site region 98506	1965 bp upstream
Tssr98507	transcription start site region 98507	447 bp upstream
Tssr98508	transcription start site region 98508	388 bp upstream
Tssr98509	transcription start site region 98509	348 bp upstream
Tssr98510	transcription start site region 98510	335 bp upstream
Tssr98511	transcription start site region 98511	122 bp upstream
Tssr98512	transcription start site region 98512	39 bp upstream
Tssr98513	transcription start site region 98513	138 bp downstream
Tssr98514	transcription start site region 98514	517 bp downstream