rs8243862 SNP Detail

Summary

• ID
  rs8243862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80634332 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             TGAGCGAAGC GCCTTCCTGG GCCGGTGAAC CCTAACGCTT TCCTCTTGTC
  Y
  CGATAGCCGG CGCCGCTAGA CTTAGGGCGG AGCGAAACTG TGCGGTCGCT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ
ss12738776	X83733_MC1122_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C	T			T
ss61290502	NES16901609	PERLEGEN	MM_PANEL2	r	SNP			A			A			A	A	G		A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ
rs8243862					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290502	NES16901609	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80634332 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	within coordinates
Plekhj1	pleckstrin homology domain containing, family J member 1	within coordinates
Rr435393	regulatory region 435393	290 bp distal
Rr435394	regulatory region 435394	within coordinates
Rr435395	regulatory region 435395	118 bp proximal
Rr435396	regulatory region 435396	245 bp proximal
Sf3a2	splicing factor 3a, subunit 2	237 bp upstream
Tssr94606	transcription start site region 94606	531 bp downstream
Tssr94607	transcription start site region 94607	388 bp downstream
Tssr94608	transcription start site region 94608	115 bp upstream
Tssr94609	transcription start site region 94609	132 bp upstream
Tssr94610	transcription start site region 94610	154 bp upstream
Tssr94611	transcription start site region 94611	404 bp upstream
Tssr98507	transcription start site region 98507	607 bp upstream
Tssr98508	transcription start site region 98508	548 bp upstream
Tssr98509	transcription start site region 98509	508 bp upstream
Tssr98510	transcription start site region 98510	495 bp upstream
Tssr98511	transcription start site region 98511	282 bp upstream
Tssr98512	transcription start site region 98512	199 bp upstream
Tssr98513	transcription start site region 98513	within coordinates
Tssr98514	transcription start site region 98514	357 bp downstream