rs8243942 SNP Detail

Summary

• ID
  rs8243942
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21334708 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AGGAAATGGA GCTTTGCCCC
  AATATATCTT AAAGATTCAT TTTGTTCGAG TTTTTTCCAT CTTCTTTGGA TATTAATCCT
  GCAGATTCAT CACTTCTGTT GGTTTTAAGG GTGAACAATT TATTTCTCAG ATCCATAGAC
  CCAAATAGAA AAATTGTAGT AGAAAATAGA ACAGAAAAAC CTGTATCCAG TCACTCTCAA
  S
  CATCACTGAG AAAGAAAAAT GGGAGGATCA GAGGTTGGCA GTGTAGCCCA GTGGTACAGC
  CCTTGCCCAG TAGATGCAAG GTTTACTCAC AAGCACCACA GAAAACTAAG GCAAATAAAA
  AGAGCGAGAG GGCTTAGGAA TGGCTCAATG GGCAAGATGC CTGCTCTGCA AGTGTGAGGC
  CATGAATCTG GATCCTCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12738856	Gsta3_6_JC6023_3	ROCHEBIO	RPAMM	f	SNP	G	G		G	G	G	G	G	G	C	G			G	G			C
ss24737519	Gsta3_6_JC6023_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8243942					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21334708 () rs orientation: reverse

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Tssr6075	transcription start site region 6075	1650 bp downstream
Tssr6076	transcription start site region 6076	1616 bp downstream
Tssr6077	transcription start site region 6077	1581 bp downstream
Tssr6078	transcription start site region 6078	352 bp upstream