rs8243944 SNP Detail

Summary

• ID
  rs8243944
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21335303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTGTTGAG TCAGCAAAGA AGATTTTCAG
  TTAATTCAGG CAACTATAAG TACATAGCCC CCACAAAGCC AACCTTCTAA AATTTTGCAT
  CACATTGAAG TGTTTTGACT AAGTGTTGAC CCTACTTAGA AAGCTAACAA GTTTTCTAAG
  R
  CGTCTGTGTC AATTCAGGTA GACATGACTG ACGAGGAACG GCCGGATGCT CTCTAGTTGT
  AGTTAAAATT GAAATCATGA TCACTTCCTC GGATATTTTC TTACTGTTCA ATAAAACAAA
  ACAAGCTTCT TAGACTCTGG AGTATTCGAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	LG/J	MRL/MpJ	SM/J	SPRET/EiJ
ss12738858	Gsta3_6_JC6024_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G		A		A
ss319656023	CHEV_1_21255160	CHEVERUD	SCREENING_POP	f	SNP							A		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	LG/J	MRL/MpJ	SM/J	SPRET/EiJ
rs8243944					SNP	G	G	G	G	G	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21335303 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Rr408399	regulatory region 408399	1862 bp proximal
Tssr6078	transcription start site region 6078	212 bp downstream