rs8243945 SNP Detail

Summary

• ID
  rs8243945
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21335347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAAAATGT GTTGAGTCAG
  CAAAGAAGAT TTTCAGTTAA TTCAGGCAAC TATAAGTACA TAGCCCCCAC AAAGCCAACC
  TTCTAAAATT TTGCATCACA TTGAAGTGTT TTGACTAAGT GTTGACCCTA CTTAGAAAGC
  TAACAAGTTT TCTAAGGCGT CTGTGTCAAT TCAGGTAGAC ATGACTGACG AGGAACGGCC
  S
  GATGCTCTCT AGTTGTAGTT AAAATTGAAA TCATGATCAC TTCCTCGGAT ATTTTCTTAC
  TGTTCAATAA AACAAAACAA GCTTCTTAGA CTCTGGAGTA TTCGAACATT GTCATTCAAT
  AGCTGTCATA TCCTTGTCAA ACGGAGAAAT CTTCCTGTCA AATTCTGGTT GATGCAAAAA
  TAATCTTTCC TTATGGAGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12738859	Gsta3_6_JC6024_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8243945					SNP	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21335347 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Rr408399	regulatory region 408399	1818 bp proximal
Tssr6078	transcription start site region 6078	256 bp downstream