rs8243946 SNP Detail

Summary

• ID
  rs8243946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21335373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTTCAG TTAATTCAGG
  CAACTATAAG TACATAGCCC CCACAAAGCC AACCTTCTAA AATTTTGCAT CACATTGAAG
  TGTTTTGACT AAGTGTTGAC CCTACTTAGA AAGCTAACAA GTTTTCTAAG GCGTCTGTGT
  CAATTCAGGT AGACATGACT GACGAGGAAC GGCCGGATGC TCTCTAGTTG TAGTTAAAAT
  Y
  GAAATCATGA TCACTTCCTC GGATATTTTC TTACTGTTCA ATAAAACAAA ACAAGCTTCT
  TAGACTCTGG AGTATTCGAA CATTGTCATT CAATAGCTGT CATATCCTTG TCAAACGGAG
  AAATCTTCCT GTCAAATTCT GGTTGATGCA AAAATAATCT TTCCTTATGG AGAGTGCCCT
  TCCTGACCAA ATACACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	MRL/MpJ	SPRET/EiJ
ss12738860	Gsta3_6_JC6024_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	MRL/MpJ	SPRET/EiJ
rs8243946					SNP	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21335373 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Rr408399	regulatory region 408399	1792 bp proximal
Tssr6078	transcription start site region 6078	282 bp downstream