rs8243947 SNP Detail

Summary

• ID
  rs8243947
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21335439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCACATT GAAGTGTTTT
  GACTAAGTGT TGACCCTACT TAGAAAGCTA ACAAGTTTTC TAAGGCGTCT GTGTCAATTC
  AGGTAGACAT GACTGACGAG GAACGGCCGG ATGCTCTCTA GTTGTAGTTA AAATTGAAAT
  CATGATCACT TCCTCGGATA TTTTCTTACT GTTCAATAAA ACAAAACAAG CTTCTTAGAC
  W
  CTGGAGTATT CGAACATTGT CATTCAATAG CTGTCATATC CTTGTCAAAC GGAGAAATCT
  TCCTGTCAAA TTCTGGTTGA TGCAAAAATA ATCTTTCCTT ATGGAGAGTG CCCTTCCTGA
  CCAAATACAC ACAGATGTGT GCACACTCAA ACTGTGAGGA ACTCTTTTCC TTTAACTTAG
  TAATGGTTTT CTTATTCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss12738861	Gsta3_6_JC6024_4	ROCHEBIO	RPAMM	f	SNP		T		T	T	T		T	T	A			T		T		T
ss60707910	NES16351412	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T		T	T		A	T	T		T		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs8243947					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60707910	NES16351412	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21335439 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Rr408399	regulatory region 408399	1726 bp proximal
Tssr6078	transcription start site region 6078	348 bp downstream