rs8243951 SNP Detail

Summary

• ID
  rs8243951
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21335499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                      TTTTGCA TCACATTGAA GTGTTTTGAC
  TAAGTGTTGA CCCTACTTAG AAAGCTAACA AGTTTTCTAA GNCGTCTGTG TCAATTCAGG
  TAGACATGAC TGACGAGGAA CGGCCNGATG CTCTCTAGTT GTAGTTAAAA TNGAAATCAT
  GATCACTTCC TCGGATATTT TCTTACTGTT CAATAAAACA AAACAAGCTT CTTAGACNCT
  GGAGTATTCG AACATTGTCA TTCAATAGCT GTCATATCCT TGTCAAACNN NGGAGAAATC
  Y
  TCCTGTCAAA TTCTGGTTGA TGCAAAAATA ATCTTTCCTT ATGGANAGTG NCCTTCCTGA
  CCAAATACAC ACAGATGTGT GCACACTCAA ACTGTG                          
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12738865	Gsta3_6_JC6024_8	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8243951					SNP	T	T	T	T	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21335499 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Rr408399	regulatory region 408399	1666 bp proximal
Tssr6078	transcription start site region 6078	408 bp downstream