rs8243952 SNP Detail

Summary

• ID
  rs8243952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21335545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGATGCTC TCTAGTTGTA
  GTTAAAATTG AAATCATGAT CACTTCCTCG GATATTTTCT TACTGTTCAA TAAAACAAAA
  CAAGCTTCTT AGACTCTGGA GTATTCGAAC ATTGTCATTC AATAGCTGTC ATATCCTTGT
  CAAACGGAGA AATCTTCCTG TCAAATTCTG GTTGATGCAA AAATAATCTT TCCTTATGGA
  R
  AGTGCCCTTC CTGACCAAAT ACACACAGAT GTGTGCACAC TCAAACTGTG AGGAACTCTT
  TTCCTTTAAC TTAGTAATGG TTTTCTTATT CAGTTATACA AACAATACAT TTATGTTCAA
  TATAGAGCAA TTGATTTCCC TGGGGCTGCA TGAATGATGG ATACAGCAGG GACAATCAAA
  TTACCCAGCC ACAGAATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12738866	Gsta3_6_JC6024_9	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8243952					SNP	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21335545 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Rr408399	regulatory region 408399	1620 bp proximal
Tssr6078	transcription start site region 6078	454 bp downstream