rs8243954 SNP Detail

Summary

• ID
  rs8243954
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21335679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTCAAA CGGAGAAATC
  TTCCTGTCAA ATTCTGGTTG ATGCAAAAAT AATCTTTCCT TATGGAGAGT GCCCTTCCTG
  ACCAAATACA CACAGATGTG TGCACACTCA AACTGTGAGG AACTCTTTTC CTTTAACTTA
  GTAATGGTTT TCTTATTCAG TTATACAAAC AATACATTTA TGTTCAATAT AGAGCAATTG
  W
  TTTCCCTGGG GCTGCATGAA TGATGGATAC AGCAGGGACA ATCAAATTAC CCAGCCACAG
  AATCTTGAAT TTCTGTAATA AAAGTATTAA AAACTTAGGT ATTCCTAATA CAGAACTGGA
  CATTCTGTGT GTCCCATTCC TAAGGTTTCT ATAACAATGT ACCACAAACT TTGTATCTTA
  AAATAATATA AACTTATTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12738868	Gsta3_6_JC6025_1	ROCHEBIO	RPAMM	f	SNP	A		A		A	A	A	A		A	T			A		A
ss60707909	NES16351429	PERLEGEN	MM_PANEL2	f	SNP		A		A	A		A		A	A	T	A	A		A		A	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8243954					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60707909	NES16351429	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21335679 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Rr408399	regulatory region 408399	1486 bp proximal
Tssr6078	transcription start site region 6078	588 bp downstream