rs8243955 SNP Detail

Summary

• ID
  rs8243955
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21334984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAATTG TTCACCCTTA
  AAACCAACAG AAGTGATGAA TCTGCAGGAT TAATATCCAA AGAAGATGGA AAAAACTCGA
  ACAAAATGAA TCTTTAAGAT ATATTGGGGC AAAGCTCCAT TTCCTTCCTC TCATCTTCAT
  TCTCTCTGGG TGTCTGTCTC CAACCTCCAC CCTGGTGCTG ATGGAGGGGC TCGGTTAGTC
  R
  TTTGACTGGC AGGGGCACAG GGCAGGGCAA GCAATAACTC TTTCTTCGGC TGCTCTCTGA
  GGCTCTGCTT TGTCTGTTGC AGGCGCTGAG AAGCAGAGTC AGCAACCTCC CCACAGTGAA
  GAAGTTTCTT CAACCTGGCA GCCAGAGGAA GCCTTTTGAT GACGCAAAAT GTGTTGAGTC
  AGCAAAGAAG ATTTTCAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12738869	Gsta3_6_JC6027_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8243955					SNP	A	A	A	A	A	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21334984 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Tssr6075	transcription start site region 6075	1926 bp downstream
Tssr6076	transcription start site region 6076	1892 bp downstream
Tssr6077	transcription start site region 6077	1857 bp downstream
Tssr6078	transcription start site region 6078	76 bp upstream