rs8243956 SNP Detail

Summary

• ID
  rs8243956
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21335021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

              TCTCATCTT CATTCTCTCT GGGTGTCTGT CTCCAACCTC CACCCTGGTG
  CTGATGGAGG GGCTCGGTTA GTCNTTTGAC TGGCAGGGGC ACAGGGCAGG GCAAGCAATA
  M
  CTCTTTCTTC GGCTGCTCTC TGAGGCTCTG CTTTGTCTGT TGCAGGCGCT GAGAANGCAG
  AGTCAGCAAC CTCCCCACAG TGAAGAAGTT TCTTCAACCT GGCAGCCAGA GGAAGCCTTT
  TGATGACGCA AAATGTGTTG AGTCAGCAAA GAAGATTTTC AGTTAATTCA GGCAACTATA
  ANTACATAGC CCCCACAAAG CCAACCTTCT AAAATTTTGC ATCACATTGA AGTGTTTTGA
  CNAAGTGTTG ACCCAA                                                
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss12738870	Gsta3_6_JC6027_2	ROCHEBIO	RPAMM	f	SNP	A		A		A	A	A	A		A	C			A		A		A
ss60707914	NES16351396	PERLEGEN	MM_PANEL2	f	SNP		A		A	A		A		A	A	C	A	A		A		A		A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs8243956					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60707914	NES16351396	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21335021 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Tssr6075	transcription start site region 6075	1963 bp downstream
Tssr6076	transcription start site region 6076	1929 bp downstream
Tssr6077	transcription start site region 6077	1894 bp downstream
Tssr6078	transcription start site region 6078	39 bp upstream