rs8244529 SNP Detail

Summary

• ID
  rs8244529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61754671 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TCTTCCAAAA GAAGTGGCAT
  TGCCTGGGGA TGTGGTTGAG TTGGTAGCGT GCTTGCCTGG TGTGCATGGA GCTCTGGGTT
  CAATCCCTGA GTAAATCCCA GCACTTGGGA GGTAGAGACA GGAAGATCCA AAATTTAAGA
  CCACCCTCAG CAACACAGGG AGTTCAAGGC CAGCCTGAGC ACCTAAGACT TTGTTCATTT
  W
  AGGAACTATG ACAGGCCACC TGCTGGGATG GGGTCATGTA TCCTCTCCCT TTTTTGAAGG
  CAACAATCCA TACCTGCCCC ATCCTGAGGA CACTCCAGAG GTGGCGTTAA CCCTGTATCC
  CTCGACAGAA CTTTAGTATC TATCTTAGTC AGGATTTTAT TGCTGCAACA AAACACCATG
  ACCAAAAAGC AAGCTGAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12739529	AF063668_MC772_7	ROCHEBIO	RPAMM	f	SNP	T		T	T	T		T		T	T	A	T				T
ss61280664	NES16779842	PERLEGEN	MM_PANEL2	r	SNP		A	A	A		A		A	A		T	A	A	A	T		A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8244529					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280664	NES16779842	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61754671 () rs orientation: reverse

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates
Gm30121	predicted gene, 30121	within coordinates
Rr215608	regulatory region 215608	1271 bp distal
Rr215609	regulatory region 215609	1130 bp proximal