rs8244971 SNP Detail

Summary

• ID
  rs8244971
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76562181 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGCG GTATTTGGAA TGAAACAACC
  M
  GAAATATTTC CTGGAACTTC TTTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12739991	X66406_MC952_6	ROCHEBIO	RPAMM	f	SNP	A		A		A		A		A	A	C	A
ss61288891	NES16903823	PERLEGEN	MM_PANEL2	r	SNP		T	T	T		T		T	T		G	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8244971					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288891	NES16903823	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76562181 () rs orientation: reverse

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	312 bp upstream
Gm48276	predicted gene, 48276	236 bp downstream
Rr434319	regulatory region 434319	within coordinates
Rr434320	regulatory region 434320	457 bp proximal
Rr434321	regulatory region 434321	1778 bp proximal
Tssr3254	transcription start site region 3254	395 bp upstream
Tssr3255	transcription start site region 3255	102 bp upstream
Tssr3256	transcription start site region 3256	61 bp upstream
Tssr98207	transcription start site region 98207	297 bp upstream