rs8244974 SNP Detail

Summary

• ID
  rs8244974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76562080 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGTTG ACTCTGAGTG GGTAAACATC
  Y
  CACACACCGT AGCAACAGGA AGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss12739994	X66406_MC952_9	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs8244974					SNP	C	C	C	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76562080 () rs orientation: reverse

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	211 bp upstream
Gm48276	predicted gene, 48276	337 bp downstream
Rr434319	regulatory region 434319	within coordinates
Rr434320	regulatory region 434320	558 bp proximal
Rr434321	regulatory region 434321	1879 bp proximal
Tssr3254	transcription start site region 3254	294 bp upstream
Tssr3255	transcription start site region 3255	1 bp upstream
Tssr3256	transcription start site region 3256	1 bp downstream
Tssr98207	transcription start site region 98207	196 bp upstream