rs8245022 SNP Detail

Summary

• ID
  rs8245022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92491643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCCTTA GCTGCACAAA
  TAGGATGCGC GGCGGGCCTT GGTAGGGGCG GAGCCTTAGC TGCACAAATA GGATGCGCGG
  R
  GGGCCTTGGT RGGGGCGGGG CCTAAGCTGC GCAAGTGGTA CACAGCTCAG GGCTGCGATT
  TCGCGCCAAA CTTGACGGCA ATCCTAGCGT GAAGGCTGGT AGGATTTTAT CCCCGCTGCC
  ATCATGGTTC GACCATTGAA CTGCATCGTC GCCGTGTCCC AAAATATGGG GATTGGCAAG
  AACGGAGACC TACCCTGGCC TCCGCTCAGG TATTGGCCGG GCTGGGCTCG GGAAATGAGC
  GGC                                                              
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ
ss12740083	J00382_SNP13A_2	ROCHEBIO	RPAMM	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ
rs8245022					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92491643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	within coordinates
Dhfr	dihydrofolate reductase	within coordinates
Gm19308	predicted gene, 19308	1215 bp downstream
Msh3	mutS homolog 3	128 bp upstream
Rr403896	regulatory region 403896	334 bp downstream
Rr483661	regulatory region 483661	399 bp distal
Rr483662	regulatory region 483662	597 bp distal
Rr483663	regulatory region 483663	447 bp distal
Rr483664	regulatory region 483664	within coordinates
Tssr120622	transcription start site region 120622	369 bp downstream
Tssr120623	transcription start site region 120623	4 bp upstream
Tssr120624	transcription start site region 120624	51 bp upstream
Tssr120625	transcription start site region 120625	77 bp upstream
Tssr120626	transcription start site region 120626	104 bp upstream
Tssr123429	transcription start site region 123429	615 bp upstream
Tssr123430	transcription start site region 123430	110 bp upstream