rs8245025 SNP Detail

Summary

• ID
  rs8245025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:21881414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

     GGCTGCA CTTGGGGAGA GTGTTTCATC CCCCTCAACC CGGACCTTAA GTTCAGACCT
  CCAGGCTGGG ACTCAGGGAG GAGGCTGAGA GGGTGCACGT GACCCTGCGG GGCACATCGC
  CCCGCCCCGT CGCGACTCGC GTGGCCACTC CCATCCTGAC CGCGCGGGTG CCGTTGCGCC
  GCCTCCGCCG TTCCCAGGTC CTCGCCTCTG GGGCTGYCCT GGACATTGCC TAACCCGAGG
  Y
  YCCGCAGCTC CTGCTCGCCC CGTCCCCGCC GGACGGTCCG AGACCGCTCA CCCAAGGAGA
  CCGCCGTGCT CTCGACCCAC GTGGTCACTC CGGAGCAGGT GGGAGTGGGC AGCGGGCGGA
  GCGGCAAGGA CAGGCGCGGT AGACAgcccg ggcggccgcg gcggggACCT GGCTGGGGGA
  GGCCAGGCTT GCGGCGG                                               
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ
ss12740086	U89988_SNP44D_4	ROCHEBIO	RPAMM	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ
rs8245025					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21881414 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr488602	regulatory region 488602			within coordinates
Rr488603	regulatory region 488603			534 bp distal
Rr488604	regulatory region 488604			611 bp proximal
Tssr124454	transcription start site region 124454			173 bp upstream
Tssr124455	transcription start site region 124455			185 bp upstream
Tssr124456	transcription start site region 124456			496 bp upstream
Tssr124457	transcription start site region 124457			1536 bp upstream
Tssr127690	transcription start site region 127690			217 bp upstream
Vdac2	voltage-dependent anion channel 2			Intron
				mRNA-UTR