rs8245055 SNP Detail

Summary

• ID
  rs8245055
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170794396 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTCCTTCATC TTTCCTGCCA
  AGAAGGGAGG AATCGCATCC CCATCTCAGG AGAGGAAGGG CAACACGCGT GTATCTTGGA
  TACCTGTTGC GCGCCATGAA CTACTGTCGC TGTGAAATCT GATCATGTCT ATTTTCACAG
  ATGAAGAAAG TGAGGCCCAG AAGCCTTAAC TTTCTTGCCC CAAATTGAAG AGCTCCCAAA
  W
  GAGTGGAGCT AGAAACAGAG ATCGACTGCC TGACGTCAAA CTAAAGCTCT CCCCCTTAGC
  ATATCGCATC CCACTAGGAA GAGCGACCTG ACCCTCTGAG TGCTATGGTC CTTTCGTGTC
  TTTCAGACTG GCTGCTGCTC CAGACCCCTC AGCTGGTGTT TCTGGAAGGG GAAACCATCA
  CGCTAAGGTG CCATAGCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12740119	Fcgr2b_1_JC4883_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8245055					SNP	T	T	T	T	T	T	T	T	A	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170794396 () rs orientation: reverse

Symbol	Name	Function Class
D1Mit147	DNA segment, Chr 1, Massachusetts Institute of Technology 147	1750 bp distal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	1005 bp proximal
Rr372438	regulatory region 372438	156 bp upstream
Tssr14956	transcription start site region 14956	1016 bp upstream
Tssr14957	transcription start site region 14957	304 bp upstream
Tssr14958	transcription start site region 14958	1377 bp downstream