rs8245059 SNP Detail

Summary

• ID
  rs8245059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170795964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCACGGGG GCTCGAGTTT
  GACCACAGCC TTTGGAAGAT CTGCTCAATT TTGGAGAGAG CAGGCAGTGT GAGGCAAGGA
  AGCCCCAAGA ACCTCAGCAG GCCCCAAGTT TCTGCTAAAA AGACACCAGC ATTCCTACTG
  AGAGCACCAA GGGTGGGACC AGGCCCAGGA AGCTTCTTCC ATTGAATTCT TCTACTTATT
  Y
  CATCCTGTGA GCCCCAGGGA AATCACAAGG AGTGTAATTG ATCCTCAGCA GGGTAAAGCA
  AGAGAGAAGA TAGGAGGGGG CAAAGGAGAC ACCCCAGAAA TATCTCTCAC CAAGATATAT
  TTCCATTTCT CTTCTCCATC CCTCCTGTCA CTCCCCCCTA CCCCACCCCC CCAGTTGCAG
  ATGGATCTCT AATCAGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12740125	Fcgr2b_1_JC4884_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8245059					SNP	C	C	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170795964 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	1468 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	1488 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	within coordinates
Rr372438	regulatory region 372438	within coordinates
Tssr14957	transcription start site region 14957	1872 bp upstream
Tssr14958	transcription start site region 14958	170 bp upstream