rs8245060 SNP Detail

Summary

• ID
  rs8245060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170797141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGATACT GAGCCCGGTT
  GCTGATCCAT TCAGAGCAGC TCCAGACAGA CAAAGAGACG GTGACAAAGA AGAGAGTGAG
  GAGATATAAA AAGAAGACTT ACCATGAGTC CCAGCAGCAA GATCTGTAAG AAAGGAAGTA
  AGCATCAACC AGGGCCTTCT GTACTGAGAC ATGCCTACCC AGACCCAGAG CCCCAACTCA
  Y
  TCCCACAGCC CACCCTTCAA GGCCTGGCCC TTCCCTGGGA CTTCCTGGAT AAAGCACACT
  TTCAGAGATA ATTAGGCCCC TTCCCCTTAG CATGTGTGTT GTGACACTTT AAAGGGCCAA
  ACACCTTTGA CTGCTAAGGC CCCGGTTGAA GTTTACATAG AATTAGTGGT TTAGTACATC
  AGACTTTGCC AAGGTCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12740126	Fcgr2b_1_JC4886_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8245060					SNP	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170797141 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	291 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	311 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	1141 bp distal
Rr25626	regulatory region 25626	962 bp proximal
Rr372438	regulatory region 372438	576 bp downstream
Tssr14958	transcription start site region 14958	1347 bp upstream