rs8245062 SNP Detail

Summary

• ID
  rs8245062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170797164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCATTCA GAGCAGCTCC
  AGACAGACAA AGAGACGGTG ACAAAGAAGA GAGTGAGGAG ATATAAAAAG AAGACTTACC
  ATGAGTCCCA GCAGCAAGAT CTGTAAGAAA GGAAGTAAGC ATCAACCAGG GCCTTCTGTA
  CTGAGACATG CCTACCCAGA CCCAGAGCCC CAACTCACTC CCACAGCCCA CCCTTCAAGG
  Y
  CTGGCCCTTC CCTGGGACTT CCTGGATAAA GCACACTTTC AGAGATAATT AGGCCCCTTC
  CCCTTAGCAT GTGTGTTGTG ACACTTTAAA GGGCCAAACA CCTTTGACTG CTAAGGCCCC
  GGTTGAAGTT TACATAGAAT TAGTGGTTTA GTACATCAGA CTTTGCCAAG GTCCATCCTG
  GGAGTAGGGT TTTTCTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12740128	Fcgr2b_1_JC4886_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8245062					SNP	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170797164 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	268 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	288 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	1164 bp distal
Rr25626	regulatory region 25626	939 bp proximal
Rr372438	regulatory region 372438	599 bp downstream
Tssr14958	transcription start site region 14958	1370 bp upstream