rs8245064 SNP Detail

Summary

• ID
  rs8245064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170797285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA CCTTTGACTG CTAAGGCCCC
  R
  GTTGAAGTTT ACATAGAATT AGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12740130	Fcgr2b_1_JC4886_5	ROCHEBIO	RPAMM	f	SNP					G	G		A	G	G						A		G				G
ss45180801	mCV24426913	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						G		G
ss60345253	NES15845030	PERLEGEN	MM_PANEL2	f	SNP	A		G	G		G	G	A		G	G	G	G		G		G		G	G			G
ss146149217	ENSMUSSNP5493048	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G								G
ss320115080	CHEV_1_172899847	CHEVERUD	SCREENING_POP	f	SNP														A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8245064					SNP	A	A	G	G	G	G	G	A	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345253	NES15845030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170797285 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	147 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	167 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	1285 bp distal
Rr25626	regulatory region 25626	818 bp proximal
Rr372438	regulatory region 372438	720 bp downstream
Tssr14958	transcription start site region 14958	1491 bp upstream