rs8245079 SNP Detail

Summary

• ID
  rs8245079
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170794917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCACAGT CCAAGCAGGG
  TTGGAGCAAA TCGTTAGCTT GCTGTGGGTA TACCATTGAG GAAACCCTGG ACCGGATGAT
  AGGAGGGAAC TACGTAAAAC GACAGCAATA GCAGTTGCTA ATAGCACCTG GTAGTTCTTC
  TAGAAGGGAA ACCTACTTTT TGCCAGGAGC CTTGTAAAAT CAATGATCTG CTCGGCAAAG
  W
  TTTAACAAGC CATGCCCTGT TTCGGATACT ACAAATATGA AGATGGACGA GACACAGCTT
  TTCACGTCGA GTGCTCACAA GGTGATGGAA GAAAAAAAAA AAGAAAGTCA AGGACCTGCT
  GGAACTGCAA GGGGGAGAGG TGAGTGCTCC CCAGAACCTT CTGGGGAGAG GTCTCCGCAC
  CTTCAGCTGA GCAGATGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12740145	Fcgr2b_1_JC4890_3	ROCHEBIO	RPAMM	f	SNP	T		T		T	T	T	A	T	T	T	A
ss12741057	Fcgr2b_2_JC4905_5	ROCHEBIO	RPAMM	f	SNP	T	T	T	T		T	T		T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8245079					SNP	T	T	T	T	T	T	T	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170794917 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	484 bp proximal
Rr372438	regulatory region 372438	within coordinates
Tssr14956	transcription start site region 14956	1537 bp upstream
Tssr14957	transcription start site region 14957	825 bp upstream
Tssr14958	transcription start site region 14958	856 bp downstream