rs8245173 SNP Detail

Summary

• ID
  rs8245173
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171045979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT TCAGGAAAAA CTAGGCACAA
  W
  GAAGGAACAG TGTTGATAGA GGCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12740243	Fer1g_4_AN2498_2	ROCHEBIO	RPAMM	f	SNP	A				T	A	A				T	T						T		A	A				A
ss12745407	Fer1g_5_AN2519_6	ROCHEBIO	RPAMM	r	SNP	T		A	A	A	A	T	T		T	A	A	T					T		T	T				T
ss45025768	mCV24419610	ABI	CRAMUS_MOUSE	f	SNP				T									A
ss49750707	NES13033184	PERLEGEN	MM_PANEL2	f	SNP		A		T	T		A		T	A		T	A	A	A		T		A			A	T			A
ss119996341	PARCsnp_1.12248	PARC_SEQ	INBRED	f	SNP											T		A
ss119998011	PARCsnp_1.01274	PARC_SEQ	INBRED	f	SNP											T		A
ss146157161	ENSMUSSNP6166384	ENSEMBL	ENSEMBL_Sanger	f	SNP				T									A
ss320117272	CHEV_1_173148541	CHEVERUD	SCREENING_POP	f	SNP																A								T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8245173					SNP	A	A	T	T	T	?	A	A	T	A	T	T	A	A	A	A	T	?	A	A	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750707	NES13033184	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171045979 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Tomm40l	translocase of outer mitochondrial membrane 40-like	within coordinates
Tssr286	transcription start site region 286	722 bp upstream