rs8245239 SNP Detail

Summary

• ID
  rs8245239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171073787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT CTGGGGAATT AAAGATAGAT
  Y
  CTATACACGG GGCATGAGCA GTATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12740309	Fer1g_1_AN2459_3	ROCHEBIO	RPAMM	f	SNP	C		C	C	T	C	C		C	T	T	C						C	C				C
ss44983441	mCV23616850	ABI	CRAMUS_MOUSE	f	SNP				C						T		C
ss49750560	NES13032487	PERLEGEN	MM_PANEL2	f	SNP		C		C	T	C		T			T	C	C	C		T	T			C	C			C
ss119996770	PARCsnp_1.12462	PARC_SEQ	INBRED	f	SNP										T		C
ss119998518	PARCsnp_1.01527	PARC_SEQ	INBRED	f	SNP										T		C
ss146158218	ENSMUSSNP650208	ENSEMBL	ENSEMBL_Sanger	f	SNP				C								C
ss320117542	CHEV_1_173176349	CHEVERUD	SCREENING_POP	f	SNP															C							C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8245239					SNP	C	C	C	C	T	C	C	T	C	T	T	C	C	C	C	T	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750560	NES13032487	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171073787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	666 bp proximal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	133 bp upstream
Rr423259	regulatory region 423259	894 bp proximal
Rr423260	regulatory region 423260	921 bp proximal
Rr423261	regulatory region 423261	1448 bp proximal
Tssr10000	transcription start site region 10000	1134 bp upstream
Tssr15023	transcription start site region 15023	878 bp downstream