rs8245241 SNP Detail

Summary

• ID
  rs8245241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171073814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAAAGAT TTCTGACAAC
  TTGAAACAGC AGCTCTTAGC ACTCACCATT CCAAGGAGGA GGTTTCCAGT GGGCTGTTTC
  CTTGGAGGGG TACATGACAG CTCCCGAAAA CTGCTCTGCC CATTCAATAT CTGGCTGCCA
  CTGCCGAGCA CCTCTGGGGA ATTAAAGATA GATTCTATAC ACGGGGCATG AGCAGTATGT
  R
  TGGTTCTTCT GTTCCAAGTC ACTTCTCAAA ACACGTTTTG GAGATTATAA TGGAATCACA
  ACATTTCTCC CTTCCCGTCC AGCCCCCCAT ATGCCCCTCC CCACTCTCCT TCAAAGTCAT
  GGCTTTTTTT TCACTAGTTG TTATTGCAGG CATACATATA TTTGTATATA CATATATATT
  CCGAAACATC CTATCCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12740311	Fer1g_1_AN2459_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8245241					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171073814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	639 bp proximal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	106 bp upstream
Rr423259	regulatory region 423259	867 bp proximal
Rr423260	regulatory region 423260	894 bp proximal
Rr423261	regulatory region 423261	1421 bp proximal
Tssr10000	transcription start site region 10000	1107 bp upstream
Tssr15023	transcription start site region 15023	851 bp downstream