rs8245255 SNP Detail

Summary

• ID
  rs8245255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171074472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTTATTTC CCATCCTTTG CCACAGGAGG CTGGCTGCAC
  CTAGGAACCT AGGAAGAAAT CTGGTCTGCG TGAGGAGGGT TACAGGCCTG GGTCATTCTC
  Y
  CCTCAGGGGT CACAGAGCCC TTGAAATGTC CTCAGAGTGG AGACATTGCA GTTCTGCAGA
  GACCGCATGT AGGGACCGCC TCCTCCTCAC CTGCTGGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12740325	Fer1g_1_AN2460_6	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T	T	T	C	T	T	C
ss44939241	mCV23616740	ABI	CRAMUS_MOUSE	f	SNP		T		T					T	C
ss119996777	PARCsnp_1.12466	PARC_SEQ	INBRED	f	SNP									T	C
ss119998526	PARCsnp_1.01531	PARC_SEQ	INBRED	f	SNP									T	C
ss146158236	ENSMUSSNP907299	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T						C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8245255					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171074472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	within coordinates
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	within coordinates
Rr423259	regulatory region 423259	209 bp proximal
Rr423260	regulatory region 423260	236 bp proximal
Rr423261	regulatory region 423261	763 bp proximal
Rr423262	regulatory region 423262	1710 bp proximal
Tssr10000	transcription start site region 10000	449 bp upstream
Tssr15023	transcription start site region 15023	193 bp downstream