rs8245769 SNP Detail

Summary

• ID
  rs8245769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116550195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                  GTTTTT AGAAAGGTGA
  GGATAGGTCT GGTTTTCTTC ACAAAGATTT GAATGGTTGT ATTTTAAGAC ACTCTTTTGC
  TCTAGGATTA ACACACCCAA GAAACAAGGA GGATTGGGAC CCATGAACAT TCCCTTAATA
  TCAGATCCCA AGCGCACCAT TGCTCAGGAT TATGGAGTCT TAAAGGCTGA TGAAGGTATC
  Y
  CTTTCAGGTA TGTACTTTAA GGGTGGGAGN NNNNNNTTGN TATGAGAACA GTNTTGTTAG
  CTAAAAGNCA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	BALB/cByJ	BALB/cJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12740903	AB023562_AN1730_1	ROCHEBIO	RPAMM	f	SNP	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	BALB/cByJ	BALB/cJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8245769					SNP	T	C	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116550195 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38558	transcription start site region 38558	1939 bp downstream
Tssr38559	transcription start site region 38559	1099 bp downstream
Tssr38560	transcription start site region 38560	1061 bp downstream
Tssr38561	transcription start site region 38561	721 bp upstream
Tssr38562	transcription start site region 38562	819 bp upstream
Tssr38563	transcription start site region 38563	949 bp upstream
Tssr38564	transcription start site region 38564	1082 bp upstream
Tssr38565	transcription start site region 38565	1113 bp upstream