rs8245777 SNP Detail

Summary

• ID
  rs8245777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116551054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTAACA ATGAAGACTT
  ATAATGCGTT TTTCTCAATC CTTCAATTTC TTCCACCCAG GGGCCTTTTT ATTATTGATG
  ATAAAGGTAT CCTTCGACAG ATAACAATAA ACGATCTTCC CGTTGGCCGC TCTGTGGATG
  AGATTATACG ACTAGTCCAG GCCTTCCAGT TCACTGACAA ACATGGTGAA GGTAAGTCAT
  Y
  TGCCTGTTAG TGACATAGTG GGTGGTAGGG TACAAAGGCT ATTGGATAAA AGGGTGATTG
  TGTCTGTGAA AGGCTGTGGT TAGTTTTCTG TGGGGGTTAA TAGTTGCCCT GAGGAAAAAA
  CAAAGGCTTT TTGTTCAGAC ACCATACTCT CCACTTCTGT TCTGATTTGG AATCACTGAC
  TGCTGCAGAT TTGAGGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12740911	AB023563_AN1731_2	ROCHEBIO	RPAMM	f	SNP			C									T				C
ss37694299	NES09219678	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C		C	C		T	C			C
ss321277804	CHEV_4_116366462	CHEVERUD	SCREENING_POP	f	SNP									C						T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8245777					SNP	C	T	C	C	C	C	C	C	C	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694299	NES09219678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116551054 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38559	transcription start site region 38559	1958 bp downstream
Tssr38560	transcription start site region 38560	1920 bp downstream
Tssr38561	transcription start site region 38561	112 bp downstream
Tssr38562	transcription start site region 38562	2 bp downstream
Tssr38563	transcription start site region 38563	90 bp upstream
Tssr38564	transcription start site region 38564	223 bp upstream
Tssr38565	transcription start site region 38565	254 bp upstream