rs8245872 SNP Detail

Summary

• ID
  rs8245872
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36055961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTTCTT CCAAGAAATA
  GGAAAAAAAA TCTAAAATTC ATATGGGTGT CCAAACGATT CCAAGTGCCT AAAGCAACCC
  TGAGTAGAAA AATAGATGCT GGAGGGATCA CAGTGCCCGA TTTCAAGCTG GAGATCCACT
  GTAAAAATAA ATAAATAAAT AAATAAATAA ATCCATAGAT AAATAAATAA AAATTCAAAA
  S
  CCACCATGTA CTGGCACAAA AACAGGCACA TAAACAATGG AATAAAATAG AGGATCCCAA
  AATAAACCCA CACAGCTCCA ACCAAGTGAT TTTTTTTTTT GAGACAGGGT TTCTCTGTGT
  AGCCTTGGCT GTCCTGGAAC TCACTCTGTA GACCAGGCTG GCCTCGAACT CAGAAATCTG
  CGAGTGCTGG GATTAAAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss12741008	AF240003_AN221_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs8245872					SNP	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36055961 () rs orientation: forward

Symbol	Name	Function Class
Tssr160749	transcription start site region 160749	655 bp upstream