rs8245875 SNP Detail

Summary

• ID
  rs8245875
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36056020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAGTGCC TAAAGCAACC
  CTGAGTAGAA AAATAGATGC TGGAGGGATC ACAGTGCCCG ATTTCAAGCT GGAGATCCAC
  TGTAAAAATA AATAAATAAA TAAATAAATA AATCCATAGA TAAATAAATA AAAATTCAAA
  AGCCACCATG TACTGGCACA AAAACAGGCA CATAAACAAT GGAATAAAAT AGAGGATCCC
  M
  AAATAAACCC ACACAGCTCC AACCAAGTGA TTTTTTTTTT TGAGACAGGG TTTCTCTGTG
  TAGCCTTGGC TGTCCTGGAA CTCACTCTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCT
  GCGAGTGCTG GGATTAAAGG CGTGCGCCAC CACGCCCGGC TCCAAGTGAT TTTTTAAAAT
  GCAGGCCTCA AAAACTTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss12741011	AF240003_AN221_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs8245875					SNP	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36056020 () rs orientation: forward

Symbol	Name	Function Class
Tssr160749	transcription start site region 160749	596 bp upstream