rs8245918 SNP Detail

Summary

• ID
  rs8245918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170795173 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   TTTTNNGAAG CATCCCAGGG AGCTGCTTCA
  AGGGCNTTTT GTCCACCCGT TTCCGCTTTT GCCAGCCCCT GTGCTCAGCN TGCAGTGGAG
  GGCANACAAA TTCCTGAGAA ACTGTGTGAA CAGNTTGTTG TGGTAGTCCT GGTTGAGCAA
  GAGAGTTCAA GGGCACGGGC AGCTGAATGT GNCAGAAAAA GGAAGTCCCT ATTTCATAGA
  AACCCTTCTA GTTCATGACA CCCAGAAAAA TGCCAATAGT ATGCAACTGA ATCCAAGCCC
  Y
  GGGGAAGAAC TGTGTATACA AAGCTGACTG ATGTATTTAA CCTTGAGCTC AGGATTCTCA
  TCTGCTCAGC TGAAGGTGCG GAGACCTCTC CCCAGAAGGT TCTAAA               
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741064	Fcgr2b_2_JC4906_5	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8245918					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170795173 () rs orientation: reverse

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	228 bp proximal
Rr372438	regulatory region 372438	within coordinates
Tssr14956	transcription start site region 14956	1793 bp upstream
Tssr14957	transcription start site region 14957	1081 bp upstream
Tssr14958	transcription start site region 14958	600 bp downstream