rs8245927 SNP Detail

Summary

• ID
  rs8245927
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170796299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCCCTC CTGTCACTCC
  CCCCTACCCC ACCCCCCCAG TTGCAGATGG ATCTCTAATC AGAAGAACAG GGCATGGAGC
  TCTGTGCTGG CTAGTATCAT AAACTTGACA TACAAATTAG AGTTATCTGA AAGGAGGGAG
  CCTCAATTGG GAAAAGGCCT TTGTGATGAT TTGAATGAAA ATGGCCCCTT ATAGGGAGTG
  S
  CACTATTAAG AGGTGTGGCC TTGTTGGAGT AGGTGTGGCC TTTTGGAGGA AGTGGGTCGC
  TGGGTTGGCT TTGAGGTTTC AGATGCTCAA GCCAGGCCCA GTGCCACTCT CTCTTCCTGC
  TGCCTACAGA TCCAGATGTA GAACACTCAG CTACCCTTCC AGCACCATGC CTGCCTGGAT
  GCTGCCATGC TTCCTGCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741073	Fcgr2b_2_JC4908_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8245927					SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170796299 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	1133 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	1153 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	299 bp distal
Rr25626	regulatory region 25626	1804 bp proximal
Rr372438	regulatory region 372438	within coordinates
Tssr14958	transcription start site region 14958	505 bp upstream