rs8245932 SNP Detail

Summary

• ID
  rs8245932
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170796553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCGCTGG GTTGGCTTTG
  AGGTTTCAGA TGCTCAAGCC AGGCCCAGTG CCACTCTCTC TTCCTGCTGC CTACAGATCC
  AGATGTAGAA CACTCAGCTA CCCTTCCAGC ACCATGCCTG CCTGGATGCT GCCATGCTTC
  CTGCTGTGAT GATAATGGAC TGAACCTCTG AACTGTAAGG AACTCCTCAA TTAAATGTTG
  Y
  TGCAATCATG GTGCCTCTAC ACAGAAATAG AAACCCTAAC TAAGACACCT TTCTTGCTAC
  AGCACATTAG AAGTTACTCC TCATATCAAA CTCGACCCCT GTGCCCATTA ACCACTTTGT
  CTTCATCCTT ACCTCTCCTC CACTTCCTCA GGCTCTGGGC ATTCACTCCC TGCTTCTTTG
  AGGTCAACCT TTTAAACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741080	Fcgr2b_2_JC4909_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8245932					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170796553 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	879 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	899 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	553 bp distal
Rr25626	regulatory region 25626	1550 bp proximal
Rr372438	regulatory region 372438	within coordinates
Tssr14958	transcription start site region 14958	759 bp upstream