rs8245933 SNP Detail

Summary

• ID
  rs8245933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170796603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCTCTC TTCCTGCTGC
  CTACAGATCC AGATGTAGAA CACTCAGCTA CCCTTCCAGC ACCATGCCTG CCTGGATGCT
  GCCATGCTTC CTGCTGTGAT GATAATGGAC TGAACCTCTG AACTGTAAGG AACTCCTCAA
  TTAAATGTTG TTGCAATCAT GGTGCCTCTA CACAGAAATA GAAACCCTAA CTAAGACACC
  Y
  TTCTTGCTAC AGCACATTAG AAGTTACTCC TCATATCAAA CTCGACCCCT GTGCCCATTA
  ACCACTTTGT CTTCATCCTT ACCTCTCCTC CACTTCCTCA GGCTCTGGGC ATTCACTCCC
  TGCTTCTTTG AGGTCAACCT TTTAAACAAT TTTACTAAGA GAGTGAAGGG CAGTTGAGAA
  CAAGGACAGT TTGTGATAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741081	Fcgr2b_2_JC4909_5	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8245933					SNP	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170796603 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	829 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	849 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr372438	regulatory region 372438	38 bp downstream
Tssr14958	transcription start site region 14958	809 bp upstream