rs8246080 SNP Detail

Summary

• ID
  rs8246080
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142219811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTACAAGG TAGAAAGGGG
  CCTACCTTGC ATGCATGGGG TCTATTGTTT CTTCTAGATA GGGCCTGGCC CACTAGACTT
  TAGCCCTGTG CTGATCCCAA TCCTTGCCCT CCCCTGCTCT GCCCCACCAC CGAGGCAGCC
  TAGGTCTCCT TTCTGGGCTT AAAAGCTCAA ATTCTGAAGA AACTAAATAT CCTTTAAGAT
  K
  CAGACTTACC CACTAAGCCT GGCTGGCACC CTCAGCCAGG GCCTCTGCTT GTCTCCCCTC
  TCTCCCTCCA GGCAGTGGGG CTTCCTTATC CCCCCGTGTG ACTTTTCCTA GCTTGTTGTA
  GTCTCCGGGC TAACTGCTCA GGAATAAGCC AAGACTTTTA CACACCCTAC TTCTCTCCGA
  GGGTCCCCAG CATGCTCTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741246	U71085_JC2148_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246080					SNP	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142219811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19969	CpG island 19969	1295 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr15	regulatory region 15	343 bp distal
Rr316	regulatory region 316	1827 bp distal
Rr658256	regulatory region 658256	894 bp distal
Tssr70256	transcription start site region 70256	917 bp downstream
Tssr70257	transcription start site region 70257	280 bp downstream
Tssr70258	transcription start site region 70258	254 bp downstream
Tssr75901	transcription start site region 75901	1384 bp upstream
Tssr75902	transcription start site region 75902	1361 bp upstream
Tssr75903	transcription start site region 75903	1243 bp upstream
Tssr75904	transcription start site region 75904	130 bp downstream
Tssr75905	transcription start site region 75905	745 bp downstream