rs8246082 SNP Detail

Summary

• ID
  rs8246082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142219380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAAGGGG CATCTGAGAG
  GGCAGCAATC ACAACCTGTG GCCTGTTTCA GAGCCTAATC TCTGCTTTCT GCCCTCCAGA
  GGTCTCTGGA GAAGCCGCTG ACTCACACCC CGGAGATGAA CTCCTGGACT TTGCCAGGTA
  GGAAAACGCT GAGGTCACCT TAAGGTGTCC ATTGAAGAGC CACCAGGGCA TGCAGGCGGG
  R
  TAGGGTGGGG GCCAGGGTAT GCATGTGTTC TTCTTCCTCT ATGTGGCTGC CCACAGAGCC
  TTCACCTGAC CTTATTTAGT CAAAGTGTGG CTCAAGGGGC AGGGAAGAGC CTGGTACAGT
  TCCGGGTCAA CCTAGGGCTC AAAAGCACAC AGCCTACCCC CAGCTAGGAT CAGCGACAGA
  TTCTTTCTCT AAGGCCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss12741248	U71085_JC2149_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs8246082					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142219380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19969	CpG island 19969	864 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr15	regulatory region 15	within coordinates
Rr316	regulatory region 316	1396 bp distal
Rr658256	regulatory region 658256	463 bp distal
Tssr70256	transcription start site region 70256	486 bp downstream
Tssr70257	transcription start site region 70257	142 bp upstream
Tssr70258	transcription start site region 70258	160 bp upstream
Tssr75901	transcription start site region 75901	953 bp upstream
Tssr75902	transcription start site region 75902	930 bp upstream
Tssr75903	transcription start site region 75903	812 bp upstream
Tssr75904	transcription start site region 75904	561 bp downstream
Tssr75905	transcription start site region 75905	1176 bp downstream