rs8246085 SNP Detail

Summary

• ID
  rs8246085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142218468 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGCT CTCCAGCTGC TCCCCTATCT
  R
  ACACCCCACC CCCACCCCCC AGGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	LG/J	SM/J	SPRET/EiJ
ss12741251	U71085_JC2151_2	ROCHEBIO	RPAMM	f	SNP	G			A
ss322471560	CHEV_7_149850636	CHEVERUD	SCREENING_POP	r	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	LG/J	SM/J	SPRET/EiJ
rs8246085					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142218468 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi19969	CpG island 19969	within coordinates
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr15	regulatory region 15	805 bp proximal
Rr316	regulatory region 316	484 bp distal
Rr658256	regulatory region 658256	within coordinates
Tssr70256	transcription start site region 70256	398 bp upstream
Tssr70257	transcription start site region 70257	1054 bp upstream
Tssr70258	transcription start site region 70258	1072 bp upstream
Tssr75901	transcription start site region 75901	41 bp upstream
Tssr75902	transcription start site region 75902	18 bp upstream
Tssr75903	transcription start site region 75903	54 bp downstream
Tssr75904	transcription start site region 75904	1473 bp downstream