rs8246088 SNP Detail

Summary

• ID
  rs8246088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142216999 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTAT TGCCCTAACT CCAAATTTTA
  Y
  AAGTTGAATC CCACCCAGAC AGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12741254	U71085_JC2152_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8246088					SNP	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142216999 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi19968	CpG island 19968	1827 bp distal
Cpgi19969	CpG island 19969	585 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr316	regulatory region 316	982 bp proximal
Rr658254	regulatory region 658254	1968 bp distal
Rr658255	regulatory region 658255	1613 bp distal
Rr658256	regulatory region 658256	within coordinates
Tssr70256	transcription start site region 70256	1867 bp upstream
Tssr75896	transcription start site region 75896	1993 bp upstream
Tssr75897	transcription start site region 75897	1975 bp upstream
Tssr75898	transcription start site region 75898	1948 bp upstream
Tssr75899	transcription start site region 75899	1405 bp upstream
Tssr75900	transcription start site region 75900	1382 bp upstream
Tssr75901	transcription start site region 75901	1401 bp downstream
Tssr75902	transcription start site region 75902	1432 bp downstream
Tssr75903	transcription start site region 75903	1523 bp downstream