rs8246089 SNP Detail

Summary

• ID
  rs8246089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142216862 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CATTT CTCGGATTCC AGAAAATGGA
  R
  AGAGTACATT CACCAATCAC ATCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741255	U71085_JC2152_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246089					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142216862 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi19968	CpG island 19968	1690 bp distal
Cpgi19969	CpG island 19969	722 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr316	regulatory region 316	1119 bp proximal
Rr658254	regulatory region 658254	1831 bp distal
Rr658255	regulatory region 658255	1476 bp distal
Rr658256	regulatory region 658256	within coordinates
Tssr75894	transcription start site region 75894	1919 bp upstream
Tssr75895	transcription start site region 75895	1887 bp upstream
Tssr75896	transcription start site region 75896	1856 bp upstream
Tssr75897	transcription start site region 75897	1838 bp upstream
Tssr75898	transcription start site region 75898	1811 bp upstream
Tssr75899	transcription start site region 75899	1268 bp upstream
Tssr75900	transcription start site region 75900	1245 bp upstream
Tssr75901	transcription start site region 75901	1538 bp downstream
Tssr75902	transcription start site region 75902	1569 bp downstream
Tssr75903	transcription start site region 75903	1660 bp downstream